PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G395842_P01
Common Namegpm902, ZEAMMB73_730346
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 369aa    MW: 41765.3 Da    PI: 7.8724
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G395842_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH192.4e-06427226
                       -S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                       k +lC+ff+  G C  G+ C F+H+
  GRMZM2G395842_P01  4 KKVLCKFFMH-GACLKGEYCEFSHD 27
                       789***8888.*************5 PP

2zf-CCCH28.42.8e-093555526
                       --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                        C f+++ G C+yG+rC++ H+
  GRMZM2G395842_P01 35 VCTFYQK-GACSYGSRCRYDHV 55
                       5******.*************7 PP

3zf-CCCH19.32e-06152173426
                        ---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                        ++C+ fa+ G C+yG+ C+ +Hg
  GRMZM2G395842_P01 152 PICS-FAAAGNCPYGEGCPQMHG 173
                        6788.*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF156639.7E-8160No hitNo description
SMARTSM003561.1E-5228IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.192229IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-7327IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-4430IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.2773057IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-43256IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-53254IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-43554IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.286148175IPR000571Zinc finger, CCCH-type
SMARTSM003560.31149174IPR000571Zinc finger, CCCH-type
SuperFamilySSF578504.29E-13208281No hitNo description
Gene3DG3DSA:3.30.40.104.1E-10211276IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001627.23E-4216276No hitNo description
PROSITE profilePS5008912.312217275IPR001841Zinc finger, RING-type
PfamPF000973.0E-7217274IPR018957Zinc finger, C3HC4 RING-type
SMARTSM001843.0E-7217274IPR001841Zinc finger, RING-type
PROSITE patternPS005180241250IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.019304332IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.526304333IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MSTKKVLCKF FMHGACLKGE YCEFSHDWSD QANNVCTFYQ KGACSYGSRC RYDHVKVSRN  60
PTVPPPRPTS STSRRASTSL QLSSYNHPPH MVHQTDSSNQ RHQISVDVLA HSASKPAWRN  120
DFQHDIVSDD GIDWSSNQNL INQTSLKPVD LPICSFAAAG NCPYGEGCPQ MHGDLCATCG  180
KLCLHPYRPD EREEHIKLCE KNHKRLVALK RSQEIECSVC LDRVLSKPTA AERKFGLLSE  240
CDHPFCIECI RNWRSNSPAS GMDVNSALRA CPICRKLSYY VIPSVLWYFS KEEKEEITES  300
YKSKLKSIDC KYFDFGTGSC PFGTSCFYKH AYRDGRLEEV ILRHLDADDG STVIAKSIRL  360
SDFLGRMDL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.272570.0aerial organ| endosperm| meristem| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G395842
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G395842_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0656290.0BT065629.1 Zea mays full-length cDNA clone ZM_BFb0371O01 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001169041.10.0uncharacterized protein LOC100382879
RefseqXP_008658836.10.0PREDICTED: LOC100382879 isoform X1
SwissprotQ5ZA070.0C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin
TrEMBLC0PBG00.0C0PBG0_MAIZE; Putative RING zinc finger domain superfamily protein isoform 1
TrEMBLK0DG290.0K0DG29_MAIZE; C3H5 C3H type transcription factor (Fragment)
STRINGGRMZM2G395842_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53263356
Representative plantOGRP40671523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-149C3H family protein